PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676766788
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C2H2
Protein Properties Length: 231aa    MW: 24837.7 Da    PI: 5.9451
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676766788genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-05204226223
                EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                +C+ C+k+F++   L++H +  H
  676766788 204 PCGSCKKTFNSEGALESHTKAkH 226
                6*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.536203231IPR007087Zinc finger, C2H2
PROSITE patternPS000280205226IPR007087Zinc finger, C2H2
PfamPF128741.1E-4205225No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MEFWGVEVQA GKPLKVKPEE GTLVHISHAS LGDNKGKKGV NVILNVKVED KKFVLGTLIT  60
ETIPQTNFDV LFDKEFELSH NWGKNSEEEE EEVEEVPATL TANGNAAKAV AKPEADDSDS  120
EMDSDDEDDS EEKEETPKAE TRKKRAHEAA PKTPVSAKKA KTEVTPKKTE EKKKGGPATP  180
HPAKKGGKTP TAATPTPKSA GQVPCGSCKK TFNSEGALES HTKAKHSATA N
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013670064.13e-84PREDICTED: histone deacetylase HDT1
SwissprotQ9FVE66e-59HDT1_ARATH; Histone deacetylase HDT1
TrEMBLV4KIA13e-78V4KIA1_EUTSA; Uncharacterized protein (Fragment)
STRINGAT3G44750.12e-56(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20272667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.21e-33histone deacetylase 3